SETHURAMAN LAB @ SDSU
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Publications, patents

Picture

 Undergraduate/graduate students supervised by me are italicized.

In Review/Submission/Revision

Tovar A, Monahan S, Kristan A, Welch W, Dettmers R, Arce C, Buck T, Ruben M, Rothenberg A, Saisho R, Cartmill R, Skaggs T, Reyes R, Lee MJ, Obrycki J, Kristan W, Sethuraman A. Like mother, like daughter? Phenotypic plasticity, environmental covariation, and heritability of size in a parthenogenetic wasp. bioRxiv DOI: 10.1101/2022.12.02.518902

Schiebelhut LM, ..., Sethuraman A, ..., Luikart G Practical guidance in conservation genomics: from study design to application (in revision)

Jones A, Obrycki JJ, Sethuraman A, Weisrock DW Shared patterns of population genomic variation and phenotypic response across rapid range expansions in two invasive lady beetle species, bioRxiv DOI: 
10.1101/2023.01.13.523993

Li H, Peng Y, Summerhays B, Shu X, Vasquez Y, Vansant H, Grenier C, Gonzalez N, Kansagra K, Cartmill R, Ling M, Xuguo Z, Obrycki JJ, Li B, Sethuraman A Veni, vedi, vici - How the Harlequin lady beetle conquered the world (in revision)

Sustaita D, Wulf G, Sethuraman A Genetic correlates of variation in beak morphology and bite performance among Loggerhead
Shrikes in California (in revision)

​
Sethuraman A, Sousa V, Hey J Model-based assessments of differential introgression and linked natural selection during divergence and speciation. bioRxiv DOI: 10.1101/786038

Sethuraman, A, Jones A, Nunziata SO, Weisrock DW, Obrycki JJ. Range-wide Population genomics of Hippodamia convergens in the Americas. 

Lynch M, Sethuraman A Accounting for Gene Flow From Unsampled “Ghost Populations” While Estimating Evolutionary History under the Isolation with Migration model. bioRxiv DOI: 10.1101/733600 (in revision)


2022

Sethuraman A Teaching Computational Genomics and Bioinformatics on a High Performance Computing Cluster - A Primer. Biology Methods and Protocols DOI: 10.1093/biomethods/bpac032

Sethuraman A, Castro D, Sanders C, Lastor S, Hausknecht-Buss H, Moron-Solano A, Zhang A, Massaro I, Kasler AM, Caceres L, Mekuria I, Vega B, Henry S, Johansen H, Vengerova G, Hristova RS, Zhang X, Read B.  Genome of a novel Sediminibacterium discovered in association with two species of freshwater stream Cyanobacteria in Southern California. G3  DOI: 10.1093/g3journal/jkac123

Grant T, Sethuraman A, Escobar M, Vourlitis G  Chronic dry nitrogen inputs alter soil microbial community composition in Southern California semi-arid shrublands. Applied Soil Ecology DOI: 10.1016/j.apsoil.2022.104496

Sethuraman A, Tovar A, Welch W, Dettmers R, Arce C, Skaggs T, Rothenberg A, Saisho R, Summerhays B, Cartmill R, Grenier C, Vasquez Y, Vansant H, Obrycki JJ Genome of the parasitoid wasp Dinocampus coccinellae reveals extensive duplications, accelerated evolution, and independent origins of thelytokous parthenogeny and solitary behavior. G3  DOI: 10.1093/g3journal/jkac001

2021

Vourlitis G, Steinecke D, Martinez T, Konda K, Rendon R, Khor S, Hall V, Sethuraman A Fire and post-fire management affects soil microbial abundance and activity in semi-arid shrubland soils. Applied Soil Ecology. DOI: 10.1016/j.apsoil.2021.104319

Rushworth C, Baucom R, Blackman B, Neiman M, Orive M, Sethuraman A, Ware J, Matute D Who are we now? A demographic assessment of the evolution societies. Evolution. DOI: 10.1111/evo.14168

Sethuraman A, Janzen FJ, Weisrock DW, Obrycki JJ Insights from population genomics to enhance and sustain biological control of insect pests. Insects. DOI: 10.3390/insects11080462

Webb A, Knoblauch J, Sabankar N, Sukesh Kallur A, Hey J, Sethuraman A The PopGen Pipeline Platform: A Software Platform for Facilitating Population Genomic Analyses. Molecular Biology and Evolution. DOI: 10.1093/molbev/msab113

2020

Grenier C, Summerhays B, Cartmill R, Martinez T, Saisho R, Rothenberg A, Tovar A, Rynerson A, Scott J, Obrycki JJ, Sethuraman A Lack of phenotypic variation despite population structure in larval utilization of pea aphids in populations of the lady beetle Hippodamia convergens. Biological Control DOI: 10.1016/j.biocontrol.2020.104507


2019

Vansant, H., Vasquez, Y. M., Obrycki, J. J., Sethuraman, A. Coccinellid host morphology dictates morphological diversity of the parasitoid wasp Dinocampus coccinellae. Biological Control DOI: 
10.1101/460998

Sethuraman, A., Gonzalez, N., Grenier, C., Kansagra, K., Mey, K., Nunez, S., Summerhays, B., Wulf, G. Continued disuse of multiple-testing correction methods in population genetics - a wake-up call? Molecular Ecology Resources. DOI: 10.1111/1755-0998.12969

2018

Hey, J., Chung, Y., Sethuraman, A., Lachance, J., Tishkoff, S., Wang, Y. Phylogeny estimation by integration over Isolation with Migration models. Molecular Biology and Evolution. DOI: 10.1093/molbev/msy162

Sethuraman, A. Estimating relatedness in admixed populations. ​G3.  DOI: 10.1534/g3.118.200485

Hendricks, S., Anderson, E.C., Antao, T.,Bernatchez L., Forester, B.R., Garner, B., Hand, B.K., Hohenlohe P.A., Kardos, M., Koop, B., Sethuraman, A., Waples, R.S., Luikart, G. Recent advances in conservation and population genomics data analysis. Evolutionary Applications. DOI: 10.1111/eva.12659  

2017


Sethuraman, A., Janzen, F.J., Rubio, M.A., Vasquez, Y., and Obrycki, J. Recent demographic histories of three predatory lady beetles reveals complex patterns of diversity and population size change in the United States. Insect Science. DOI: 10.1111/1744-7917.12481

Mitchell, T.S., Refsnider, J.M., Sethuraman, A., Warner, D.A., Janzen, F.J. 2017. Experimental assessment of winter conditions on turtle nesting phenology and behavior. Evolutionary Ecology Research, 18: 271-280. 

​2016

Pasala, A., Sethuraman, A., Vibhu, N.S. and Gorthi, R.P., Infosys Technologies, Inc., 2016. Method for providing context aware access in global software project management. U.S. Patent 9,324,059.

Sethuraman, A. and Hey, J., 2016. IMa2p–parallel MCMC and inference of ancient demography under the Isolation with migration (IM) model. Molecular Ecology Resources, 16(1), pp.206-215. DOI: 10.1111/1755-0998.12437

Knoblauch, J., Sethuraman, A. and Hey, J. 2016. IMGui - A browser-based GUI for Isolation with Migration Analyses. Molecular Biology and Evolution 
34 (2): 500-504. DOI: 10.1093/molbev/msw252

2015

Hey, J., Chung, Y. and Sethuraman, A., 2015. On the occurrence of false positives in tests of migration under an isolation‐with‐migration model.Molecular Ecology, 24(20), pp.5078-5083. DOI: 10.1111/mec.13381

Sethuraman, A., Janzen, F.J. and Obrycki, J., 2015. Population genetics of the predatory lady beetle Hippodamia convergens. Biological Control, 84, pp.1-10. DOI:10.1016/j.biocontrol.2015.01.002

2014

Sethuraman, A., McGaugh, S.E., Becker, M.L., Chandler, C.H., Christiansen, J.L., Hayden, S., LeClere, A., Monson-Miller, J., Myers, E.M., Paitz, R.T., Refsnider, J.M., and Janzen, F.J. 2014. Population genetics of Blanding’s turtle (Emys blandingii) in the midwestern United States. Conservation genetics, 15(1), pp.61-73. DOI:10.1007/s10592-013-0521-8

2013

Shaffer, H.B., et al., 2013. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology, 14(3), p.1. DOI: 10.1186/gb-2013-14-3-r28

PhD Thesis: 

Sethuraman, A., "On inferring and interpreting genetic population structure - applications to conservation, and the estimation of pairwise genetic relatedness" (2013). Graduate Theses and Dissertations, Iowa State University. 13332
. https://lib.dr.iastate.edu/etd/13332 

Prior to 2013

Gorthi, R.S., Niranjani, S., Pasala, A., Sethuraman, A. (2009) Applications of Collaborative Multi-Agent Technology to Business – A Comprehensive Survey. SETLabs Briefings on Knowledge Engineering and Management, Infosys Limited.

Pasala, A., Sethuraman, A., Niranjani, S., Gorthi, R.P. (2009) Managing Global Software: the MAS way. SETLabs Briefings on Knowledge Engineering and Management, Infosys Limited.

Pasala, A., Sethuraman, A., Niranjani S., Gorthi, R.P., Gadde B., Context-aware Mobile Assistant Agents in Software Project Management. Proceedings of IEEE TENCON 2008, IEEE. DOI: 10.1109/TENCON.2008.4766780

Sethuraman, A., Yalla, K.K., Sarin, A. and Gorthi, R.P., 2008, January. Agents assisted software project management. In Proceedings of the 1st Bangalore Annual Compute Conference (p. 5). ACM. DOI: 10.1145/1341771.1341777


 






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